Pumpkin Cheesecake Muffins

Total Time: 40 mins Difficulty: Beginner
Whisk up some fall magic with these luscious Pumpkin Cheesecake Muffins that are perfect for any occasion!
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There’s a special feeling when warm spices and creamy richness come together in a cozy, handheld bite. These Pumpkin Cheesecake Muffins capture that magic, blending smooth pumpkin puree with the sweet tang of cheesecake in a way that feels like a hug on a crisp autumn morning. With each bite, you’ll taste the perfect balance of cinnamon, nutmeg, and cloves dancing alongside velvety cheesecake centers. I still remember the first time I tried one fresh from the oven—steam swirling through the air, and I couldn’t resist sneaking a taste before the kitchen had even cooled down.

This recipe is beginner-friendly, taking just 15 minutes to prepare, 20 minutes to bake, and a brief 5-minute rest before devouring. Each muffin clocks in at about 210 calories, making them a sensible and indulgent treat for breakfast or dessert. Whether you’re hosting a fall brunch, packing school lunches, or simply craving a cozy snack, these muffins deliver comfort in every crumb. Grab your mixing bowls and muffin tin, and let’s whisk up some fall magic!

KEY INGREDIENTS IN PUMPKIN CHEESECAKE MUFFINS

Before we dive into the step-by-step baking adventure, let’s chat about the heart and soul of these muffins: the ingredients. Each one has its own role in bringing moisture, structure, flavor, and that irresistible cheesecake swirl to life. Here’s what you’ll need:

  • Canned pumpkin puree

Provides the moist, earthy base and vibrant color that screams fall. Its natural sweetness pairs beautifully with warm spices and keeps the muffins tender.

  • Granulated sugar

Sweetens the pumpkin batter and helps it caramelize slightly at the edges. It also balances out the tangy richness of the cheesecake center.

  • Vegetable oil

Keeps the muffins incredibly moist and gives them a delicate crumb. Unlike butter, oil delivers a softer texture that stays fresh for days.

  • Large eggs

Bind all the ingredients together and add structure, ensuring your muffins rise just right without collapsing around the cheesecake filling.

  • All-purpose flour

The backbone of the muffins, providing the gluten structure that supports those cheesecake pockets and gives a satisfying chew.

  • Baking powder

Acts as a primary leavening agent, giving lift and fluffiness to the pumpkin batter so your muffins aren’t dense.

  • Baking soda

Works alongside baking powder to help the muffins rise and gives a slight tenderness by neutralizing acidity in the pumpkin.

  • Salt

Enhances all the flavors and balances out the sweetness, making each spice note pop without being cloying.

  • Ground cinnamon

The star spice of fall—warm, sweet, and slightly woody. It infuses the pumpkin batter with that classic autumnal aroma.

  • Ground nutmeg

Adds a hint of nuttiness and warmth, complementing the cinnamon and deepening the overall spice profile.

  • Ground cloves

Just a pinch brings an earthy, pungent kick that ties together the cinnamon and nutmeg into a well-rounded spice blend.

  • Cream cheese

Softened and whipped into a sweet filling, it creates luscious, tangy pockets of indulgence at the heart of each muffin.

  • Vanilla extract

Enhances the natural flavors of pumpkin and spices and gives the cheesecake swirl a smooth, fragrant finish.

HOW TO MAKE PUMPKIN CHEESECAKE MUFFINS

Let’s roll up our sleeves and transform these ingredients into muffins that dazzle. From mixing batters to swirling in that creamy cheesecake center, each step is designed for maximum flavor and ease.

1. Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners. Ensuring the oven is fully heated before you start baking guarantees even rise and a tender crumb.

2. In a large mixing bowl, combine the pumpkin puree, granulated sugar, vegetable oil, and eggs. Use a whisk or electric mixer on low speed to mix until smooth and fully integrated—no streaks of egg or oil should remain.

3. In a separate bowl, whisk together the all-purpose flour, baking powder, baking soda, salt, ground cinnamon, ground nutmeg, and ground cloves. This dry mix distributes the leavening agents and spices evenly so every bite is perfectly seasoned.

4. Gradually add the dry ingredients to the pumpkin mixture, gently folding with a spatula or spoon. Stir until just combined, taking care to avoid overmixing, which can lead to tough muffins.

5. In a small bowl, beat the softened cream cheese, granulated sugar, and vanilla extract with an electric mixer until smooth and creamy. This will become your cheesecake swirl.

6. Fill each muffin liner halfway with the pumpkin batter. Add a spoonful of the cream cheese mixture into the center of each, then top with the remaining pumpkin batter, making sure the cheesecake is fully covered.

7. Bake in the preheated oven for 18–22 minutes, or until a toothpick inserted into the muffin (avoiding the cream cheese center) comes out clean. The tops should spring back slightly when pressed.

8. Allow the muffins to cool in the pan for about 5 minutes, then transfer them to a wire rack to cool completely. This rest time helps them set and keeps the cheesecake filling from sinking.

SERVING SUGGESTIONS FOR PUMPKIN CHEESECAKE MUFFINS

Once these muffins are baked and cooled, the real fun begins. Whether you’re sharing them with friends or savoring one with your morning coffee, you can elevate the experience with simple serving touches. Here are a few of my favorite ways to present and enjoy these fall treats:

  • Pair with a warm latte topped with a dash of cinnamon. The creamy coffee complements the cheesiness and enhances the spice blend for a cozy café-style moment.
  • Serve alongside a light dusting of powdered sugar or a simple drizzle of maple glaze. The dusting adds an elegant touch, while a maple drizzle layers in extra sweetness and fall flair.
  • Arrange on a wooden board with fresh apple slices, pear wedges, or candied nuts. This rustic display turns your muffins into the star of a charming autumn brunch spread.
  • Warm gently in the microwave for 10 seconds, then slather with softened butter or a schmear of cream cheese. The warmth heightens the pumpkin aroma and creates a melt-in-your-mouth texture.

HOW TO STORE PUMPKIN CHEESECAKE MUFFINS

Keeping these muffins fresh is easy, so you can bake once and enjoy all week long. Proper storage preserves their moisture, spice notes, and the integrity of that creamy center. Here’s how to keep them at their best:

  • Store in an airtight container at room temperature for up to two days. Make sure the container seals well to maintain moisture without making them soggy.
  • Refrigerate in a single layer inside a sealed container for up to one week. Chilling firms up the cheesecake swirl and gives the muffins a delightful, slightly firmer bite.
  • For longer storage, freeze cooled muffins individually on a baking sheet, then transfer to a freezer-safe bag. Freeze for up to three months, and thaw in the fridge or at room temperature when ready to eat.
  • To refresh refrigerated or thawed muffins, pop them in a 300°F oven for 5–7 minutes or microwave for 10–15 seconds. This brings back the fresh-baked warmth and soft crumb.

CONCLUSION

Baking these Pumpkin Cheesecake Muffins is like wrapping yourself in a cozy blanket of fall flavors. From the first swirl of creamy cheesecake to the warm spices that fill your kitchen, this recipe offers both simplicity and indulgence. With just 15 minutes of prep and 20 minutes in the oven, even a beginner home cook can create a memorable dessert or snack that’s perfect for family gatherings, school lunches, or weekend brunches. Every bite carries the essence of autumn, with that satisfying blend of pumpkin, spices, and tangy cream cheese. Feel free to experiment with streusel toppings or add-ins like chopped nuts or raisins—you’ll find countless ways to make this recipe your own.

You can easily print this article and tuck it into your recipe box for future baking adventures. At the bottom, you’ll find a FAQ section to guide you through any questions that pop up along the way. If you give these muffins a try, I’d love to hear how they turned out: leave a comment, share your tweaks, or drop any questions below. Happy baking, and may your kitchen always be filled with the sweet scent of fall!

Pumpkin Cheesecake Muffins

Difficulty: Beginner Prep Time 15 mins Cook Time 20 mins Rest Time 5 mins Total Time 40 mins
Calories: 210

Description

These Pumpkin Cheesecake Muffins blend the warm spices of fall with creamy cheesecake, making each bite a delightful experience that’s both cozy and indulgent.

Ingredients

Instructions

  1. Preheat your oven to 350°F (175°C). Line a muffin tin with paper liners.
  2. In a large mixing bowl, combine the pumpkin puree, 1 cup granulated sugar, vegetable oil, and eggs. Mix until smooth and well combined.
  3. In a separate bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, nutmeg, and cloves.
  4. Gradually add the dry ingredients to the pumpkin mixture, stirring until just combined. Avoid overmixing.
  5. In a small bowl, beat the cream cheese, 1/4 cup granulated sugar, and vanilla extract until smooth and creamy.
  6. Fill each muffin liner halfway with the pumpkin batter. Add a spoonful of the cream cheese mixture to the center of each. Top with the remaining pumpkin batter, ensuring the cream cheese is covered.
  7. Bake in the preheated oven for 18-22 minutes, until a toothpick inserted into the muffin (avoiding the cream cheese center) comes out clean.
  8. Allow the muffins to cool in the pan for about 5 minutes before transferring them to a wire rack to cool completely.

Note

  • To make these muffins even more decadent, consider adding a streusel topping made with brown sugar, flour, and butter.
  • These muffins can be stored in an airtight container in the refrigerator for up to a week.
  • For a richer flavor, substitute some of the granulated sugar with brown sugar in the batter.
  • Feel free to incorporate some chopped nuts or raisins into the batter for added texture.
Keywords: pumpkin muffins, cheesecake, fall baking, easy recipes, dessert, autumn treats

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Frequently Asked Questions

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Can I use fresh pumpkin instead of canned pumpkin puree for this recipe?

Yes, you can use fresh pumpkin instead of canned pumpkin puree. To do this, you will need to cook and puree the pumpkin. Roast the pumpkin halves in the oven until tender, scoop out the flesh, and blend it until smooth. Make sure to drain any excess water to achieve a similar consistency to canned pumpkin.

How can I tell when the muffins are done baking?

The muffins are done baking when a toothpick inserted into the center of a muffin (avoiding the cream cheese filling) comes out clean or with a few moist crumbs attached. Keep an eye on them as they bake, especially around the 18-minute mark, to prevent overbaking.

Can I make these muffins gluten-free?

Yes, you can make these muffins gluten-free by substituting the all-purpose flour with a gluten-free flour blend. Ensure that the blend you use is suitable for baking. Keep in mind that the texture may vary slightly, but they should still turn out delicious.

How do I store leftover muffins, and how long do they last?

Leftover muffins should be stored in an airtight container in the refrigerator for up to a week. You can also freeze them for longer storage. To freeze, place them in a single layer on a baking sheet until frozen solid, then transfer to a freezer-safe bag or container. They can be reheated directly from frozen in the microwave or oven.

Can I add mix-ins to the muffin batter, and what do you recommend?

Absolutely! You can enhance the muffins by adding mix-ins such as chopped nuts (like walnuts or pecans), chocolate chips, or raisins to the batter. If you do add these, ensure that you fold them in gently to maintain the muffins' texture and structure.

Emily Harper

Food and Lifestyle Blogger

Hi there! I’m Emily Harper, the soul behind PinchOfComfort.com — a place where simple ingredients come together to create the kind of food that feels like a warm hug.

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